SRX9390334
GSM4871763: MM.1S p300; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
MM1.S multiple myeloma cell line
cell type
Multiple myeloma
treatment
none
chip antibody
p300

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked and lysed, lysates were sonicated, nuclei were clarified, and histone-DNA complexes were isolated with antibody Used Illumina's Nextera DNA Library Prep Kit to perform ChIPmentation protocol for ChIP samples.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13750624
Reads aligned (%)
80.9
Duplicates removed (%)
9.9
Number of peaks
1488 (qval < 1E-05)

hg19

Number of total reads
13750624
Reads aligned (%)
79.0
Duplicates removed (%)
8.5
Number of peaks
1430 (qval < 1E-05)

Base call quality data from DBCLS SRA