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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: EP300
wikigenes
PDBj
CellType: MM.1S
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX9390334
GSM4871763: MM.1S p300; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
EP300
Cell type
Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma
Attributes by original data submitter
Sample
source_name
MM1.S multiple myeloma cell line
cell type
Multiple myeloma
treatment
none
chip antibody
p300
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked and lysed, lysates were sonicated, nuclei were clarified, and histone-DNA complexes were isolated with antibody Used Illumina's Nextera DNA Library Prep Kit to perform ChIPmentation protocol for ChIP samples.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
13750624
Reads aligned (%)
80.9
Duplicates removed (%)
9.9
Number of peaks
1488 (qval < 1E-05)
hg19
Number of total reads
13750624
Reads aligned (%)
79.0
Duplicates removed (%)
8.5
Number of peaks
1430 (qval < 1E-05)
Base call quality data from
DBCLS SRA